The suspension takes effect immediately, with Nigerian teams and officials excluded from international matches and meetings.
FIFA has set a July 15 deadline to resolve the problem, or Nigeria faces exclusion from the Under-20 Women’s World Cup which kicks off Aug. 5 in Canada.
Nigeria’s government ousted the football federation leadership and arrested its president Aminu Maigari after he returned from Brazil last week.
The government blamed officials for not settling a player payment dispute.
Nigeria advanced from the group stage, but lost 2-0 to France in the Round of 16.
FIFA refuses to recognize a Nigerian court’s order for the sports ministry to appoint new federation leaders.
